HL_9Y4G_063

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_063 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1547

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9Y4G|1|A6|C|4417
9Y4G|1|A6|G|4418
9Y4G|1|A6|U|4419
9Y4G|1|A6|U|4420
9Y4G|1|A6|C|4421
9Y4G|1|A6|A|4422
9Y4G|1|A6|U|4423
9Y4G|1|A6|A|4424
9Y4G|1|A6|G|4425

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L10-like

Chain Cm

60S ribosomal protein L40