HL_9Y4G_064

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9Y4G|1|A6|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y4G_064 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.1698

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Y4G|1|A6|A|4474
9Y4G|1|A6|G|4475
9Y4G|1|A6|C|4476
9Y4G|1|A6|A|4477
9Y4G|1|A6|G|4478
9Y4G|1|A6|A|4479
9Y4G|1|A6|A|4480
9Y4G|1|A6|U|4481

Current chains

Chain A6

LSU-beta rRNA (2108-MER)

Nearby chains

Chain CH

60S ribosomal protein L9

Chain Cm

60S ribosomal protein L40