HL_9Y4G_117
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACUGAA(YYG)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: YYG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y4G_117 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.1562
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9Y4G|1|Bb|A|31
9Y4G|1|Bb|C|32
9Y4G|1|Bb|U|33
9Y4G|1|Bb|G|34
9Y4G|1|Bb|A|35
9Y4G|1|Bb|A|36
9Y4G|1|Bb|YYG|37
9Y4G|1|Bb|A|38
9Y4G|1|Bb|U|39
Current chains
- Chain Bb
- tRNA (77-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 40S ribosomal protein S23
- Chain Af
- 40S ribosomal protein S27a
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Dd
- RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U*(MG))-3')
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