HL_9Y79_019

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

9Y79|1|D|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_019 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.2697

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

9Y79|1|D|G|617
9Y79|1|D|C|618
9Y79|1|D|U|619
9Y79|1|D|C|620
9Y79|1|D|A|621
9Y79|1|D|A|622
9Y79|1|D|C|623

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain U

Small ribosomal subunit protein bS16