HL_9Y79_028

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9Y79|1|D|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_028 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2222

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9Y79|1|D|G|1089
9Y79|1|D|U|1090
9Y79|1|D|U|1091
9Y79|1|D|A|1092
9Y79|1|D|A|1093
9Y79|1|D|G|1094
9Y79|1|D|U|1095
9Y79|1|D|C|1096

Current chains

Chain D

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein bS21

Chain G

30S ribosomal protein S2

Chain M

Small ribosomal subunit protein uS7