HL_9Y79_050

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9Y79|1|a|U|546, 9Y79|1|a|A|547, 9Y79|1|a|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_050 not in the Motif Atlas

Geometric match to HL_8Y0B_001

Geometric discrepancy: 0.2083

The information below is about HL_8Y0B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9Y79|1|a|C|544
9Y79|1|a|U|545
9Y79|1|a|U|546
9Y79|1|a|A|547
9Y79|1|a|G|548
9Y79|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

Ribosomal protein L21

Chain s

Large ribosomal subunit protein uL13