HL_9Y79_076

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

9Y79|1|a|A|1780, 9Y79|1|a|U|1781, 9Y79|1|a|U|1782, 9Y79|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_076 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1059

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9Y79|1|a|U|1777
9Y79|1|a|U|1778
9Y79|1|a|U|1779
9Y79|1|a|A|1780
9Y79|1|a|U|1781
9Y79|1|a|U|1782
9Y79|1|a|A|1783
9Y79|1|a|A|1784
9Y79|1|a|A|1785
9Y79|1|a|A|1786
9Y79|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34