HL_9Y79_082

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

9Y79|1|a|A|2268, 9Y79|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_082 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1274

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.3

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9Y79|1|a|C|2264
9Y79|1|a|U|2265
9Y79|1|a|A|2266
9Y79|1|a|A|2267
9Y79|1|a|A|2268
9Y79|1|a|G|2269
9Y79|1|a|A|2270
9Y79|1|a|G|2271
9Y79|1|a|U|2272
9Y79|1|a|A|2273
9Y79|1|a|A|2274
9Y79|1|a|C|2275
9Y79|1|a|G|2276

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain v

50S ribosomal protein L16