HL_9Y79_089

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9Y79|1|a|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_089 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1676

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Y79|1|a|U|2528
9Y79|1|a|G|2529
9Y79|1|a|A|2530
9Y79|1|a|A|2531
9Y79|1|a|G|2532
9Y79|1|a|U|2533
9Y79|1|a|A|2534
9Y79|1|a|G|2535

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein uL6

Chain q

50S ribosomal protein L36