HL_9Y79_094

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9Y79|1|a|U|2797, 9Y79|1|a|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y79_094 not in the Motif Atlas

Geometric match to HL_9PN5_018

Geometric discrepancy: 0.3706

The information below is about HL_9PN5_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9Y79|1|a|C|2795
9Y79|1|a|U|2796
9Y79|1|a|U|2797
9Y79|1|a|U|2798
9Y79|1|a|A|2799
9Y79|1|a|A|2800
9Y79|1|a|G|2801

Current chains

Chain a

23S rRNA

Nearby chains