HL_9YDB_053

3D structure

PDB id

9YDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDB_053 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1847

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9YDB|1|A|C|2840
9YDB|1|A|G|2841
9YDB|1|A|U|2842
9YDB|1|A|U|2843
9YDB|1|A|C|2844
9YDB|1|A|A|2845
9YDB|1|A|U|2846
9YDB|1|A|A|2847
9YDB|1|A|G|2848

Current chains

Chain A

25S RNA

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Lo

Ubiquitin-60S ribosomal protein L40