HL_9YDC_036
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9YDC|1|A|C|1846, 9YDC|1|A|G|1848, 9YDC|1|A|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_036 not in the Motif Atlas
- Homologous match to HL_9PN5_040
- Geometric discrepancy: 0.0754
- The information below is about HL_9PN5_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.5
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9YDC|1|A|C|1844
9YDC|1|A|G|1845
9YDC|1|A|C|1846
9YDC|1|A|A|1847
9YDC|1|A|G|1848
9YDC|1|A|C|1849
9YDC|1|A|A|1850
9YDC|1|A|G|1851
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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