HL_9YDC_087
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9YDC|1|E|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_087 not in the Motif Atlas
- Homologous match to HL_9PN5_097
- Geometric discrepancy: 0.2136
- The information below is about HL_9PN5_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9YDC|1|E|G|997
9YDC|1|E|A|998
9YDC|1|E|U|999
9YDC|1|E|C|1000
9YDC|1|E|A|1001
9YDC|1|E|G|1002
9YDC|1|E|A|1003
9YDC|1|E|U|1004
9YDC|1|E|A|1005
9YDC|1|E|C|1006
9YDC|1|E|C|1007
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- messenger RNA
- Chain SZ
- 40S ribosomal protein S14-B
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain n
- Transfer RNA; tRNA
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