HL_9YDD_045
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|A|A|2372, 9YDD|1|A|A|2373, 9YDD|1|A|C|2374
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_045 not in the Motif Atlas
- Homologous match to HL_9SUM_046
- Geometric discrepancy: 0.0584
- The information below is about HL_9SUM_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.4
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|G|2369
9YDD|1|A|G|2370
9YDD|1|A|G|2371
9YDD|1|A|A|2372
9YDD|1|A|A|2373
9YDD|1|A|C|2374
9YDD|1|A|G|2375
9YDD|1|A|G|2376
9YDD|1|A|G|2377
9YDD|1|A|C|2378
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain Lg
- 60S ribosomal protein L32
Coloring options: