HL_9YDD_090
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GACUCAACAC
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|E|A|1196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_090 not in the Motif Atlas
- Homologous match to HL_9SUM_092
- Geometric discrepancy: 0.0657
- The information below is about HL_9SUM_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|G|1188
9YDD|1|E|A|1189
9YDD|1|E|C|1190
9YDD|1|E|U|1191
9YDD|1|E|C|1192
9YDD|1|E|A|1193
9YDD|1|E|A|1194
9YDD|1|E|C|1195
9YDD|1|E|A|1196
9YDD|1|E|C|1197
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein S16-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SK
- 40S ribosomal protein S25-A
- Chain SM
- 40S ribosomal protein S29-A
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
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