HL_9YDE_021

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9YDE|1|A|A|913, 9YDE|1|A|G|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_021 not in the Motif Atlas

Homologous match to HL_9PN5_021

Geometric discrepancy: 0.068

The information below is about HL_9PN5_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9YDE|1|A|G|910
9YDE|1|A|C|911
9YDE|1|A|G|912
9YDE|1|A|A|913
9YDE|1|A|A|914
9YDE|1|A|A|915
9YDE|1|A|G|916
9YDE|1|A|A|917
9YDE|1|A|C|918

Current chains

Chain A

25S RNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LP

60S ribosomal protein L15-A

Chain Ll

60S ribosomal protein L37-A