HL_9YDE_045

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9YDE|1|A|A|2372, 9YDE|1|A|A|2373, 9YDE|1|A|C|2374

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_045 not in the Motif Atlas

Homologous match to HL_9PN5_049

Geometric discrepancy: 0.0644

The information below is about HL_9PN5_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9YDE|1|A|G|2369
9YDE|1|A|G|2370
9YDE|1|A|G|2371
9YDE|1|A|A|2372
9YDE|1|A|A|2373
9YDE|1|A|C|2374
9YDE|1|A|G|2375
9YDE|1|A|G|2376
9YDE|1|A|G|2377
9YDE|1|A|C|2378

Current chains

Chain A

25S RNA

Nearby chains

Chain LE

60S ribosomal protein L3

Chain Lg

60S ribosomal protein L32