IL_10FZ_035

3D structure

PDB id

10FZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli missing the gene encoding for the 16S rRNA 2'-O-methyltransferase RsmI

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

10FZ|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10FZ_035 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.2084

The information below is about IL_8B0X_034

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

10FZ|1|A|U|684
10FZ|1|A|G|685
10FZ|1|A|U|686
10FZ|1|A|A|687
10FZ|1|A|G|688
*
10FZ|1|A|C|699
10FZ|1|A|G|700
10FZ|1|A|U|701
10FZ|1|A|A|702
10FZ|1|A|G|703
10FZ|1|A|A|704
10FZ|1|A|G|705
10FZ|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11