IL_10QM_064

3D structure

PDB id

10QM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli 50S ribosomal subunit bound to compound 48a

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

10QM|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_10QM_064 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1106

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

10QM|1|I|C|1686
10QM|1|I|G|1687
10QM|1|I|U|1688
10QM|1|I|A|1689
10QM|1|I|A|1690
10QM|1|I|C|1691
*
10QM|1|I|G|1696
10QM|1|I|G|1697
10QM|1|I|A|1698
10QM|1|I|G|1699
10QM|1|I|A|1700
10QM|1|I|A|1701
10QM|1|I|G|1702

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2