IL_11BQ_034

3D structure

PDB id

11BQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome containing an evolved 16S rRNA (EC-S3.5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

11BQ|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11BQ_034 not in the Motif Atlas

Geometric match to IL_8B0X_034

Geometric discrepancy: 0.091

The information below is about IL_8B0X_034

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

11BQ|1|A|U|684
11BQ|1|A|G|685
11BQ|1|A|U|686
11BQ|1|A|A|687
11BQ|1|A|G|688
*
11BQ|1|A|C|699
11BQ|1|A|G|700
11BQ|1|A|U|701
11BQ|1|A|A|702
11BQ|1|A|G|703
11BQ|1|A|A|704
11BQ|1|A|G|705
11BQ|1|A|A|706

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain a

Large subunit ribosomal RNA; LSU rRNA