IL_11DG_013

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGG*CCUGA

Length

9 nucleotides

Bulged bases

11DG|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_013 not in the Motif Atlas

Geometric match to IL_9H3G_166

Geometric discrepancy: 0.2883

The information below is about IL_9H3G_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

11DG|1|A|U|375
11DG|1|A|G|376
11DG|1|A|G|377
11DG|1|A|G|378
*
11DG|1|A|C|385
11DG|1|A|C|386
11DG|1|A|U|387
11DG|1|A|G|388
11DG|1|A|A|389

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16