IL_11DG_051

3D structure

PDB id

11DG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved Vibrio cholerae 16S rRNA (VC-S4.4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11DG_051 not in the Motif Atlas

Geometric match to IL_8B0X_062

Geometric discrepancy: 0.109

The information below is about IL_8B0X_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

11DG|1|A|A|1431
11DG|1|A|A|1432
11DG|1|A|G|1433
11DG|1|A|A|1434
11DG|1|A|A|1435
11DG|1|A|G|1436
*
11DG|1|A|C|1467
11DG|1|A|C|1468
11DG|1|A|A|1469
11DG|1|A|C|1470
11DG|1|A|U|1471

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain o

Large ribosomal subunit protein bL19