IL_11EL_089

3D structure

PDB id

11EL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Vibrio cholerae (VC-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

11EL|1|a|U|846, 11EL|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11EL_089 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1329

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

11EL|1|a|A|844
11EL|1|a|A|845
11EL|1|a|U|846
11EL|1|a|U|847
11EL|1|a|C|848
*
11EL|1|a|G|930
11EL|1|a|U|931
11EL|1|a|U|932
11EL|1|a|A|933
11EL|1|a|U|934

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L30