3D structure

PDB id
8B0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.55 Å

Loop

Sequence
AAUUC*GUUAU
Length
10 nucleotides
Bulged bases
8B0X|1|a|U|848, 8B0X|1|a|U|933
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8B0X_179 not in the Motif Atlas
Homologous match to IL_5J7L_399
Geometric discrepancy: 0.1141
The information below is about IL_5J7L_399
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_96236.1
Basepair signature
cWW-tWW-cWW-L-cWW
Number of instances in this motif group
1

Unit IDs

8B0X|1|a|A|846
8B0X|1|a|A|847
8B0X|1|a|U|848
8B0X|1|a|U|849
8B0X|1|a|C|850
*
8B0X|1|a|G|932
8B0X|1|a|U|933
8B0X|1|a|U|934
8B0X|1|a|A|935
8B0X|1|a|U|936

Current chains

Chain a
23S rRNA

Nearby chains

Chain y
50S ribosomal protein L30

Coloring options:


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