IL_11FV_031

3D structure

PDB id

11FV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-S3.3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

11FV|1|C|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11FV_031 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1879

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

11FV|1|C|U|656
11FV|1|C|A|657
11FV|1|C|G|658
11FV|1|C|A|659
11FV|1|C|G|660
*
11FV|1|C|U|734
11FV|1|C|G|735
11FV|1|C|G|736
11FV|1|C|A|737

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein bS6

Chain w

Small ribosomal subunit protein uS15

Chain z

Small ribosomal subunit protein bS18