IL_11GG_017

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

11GG|1|C|A|406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_017 not in the Motif Atlas

Homologous match to IL_6CZR_359

Geometric discrepancy: 0.5535

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

11GG|1|C|U|403
11GG|1|C|G|404
11GG|1|C|A|405
11GG|1|C|A|406
11GG|1|C|G|407
11GG|1|C|A|408
11GG|1|C|A|409
11GG|1|C|G|410
*
11GG|1|C|U|421
11GG|1|C|G|422
11GG|1|C|U|423
11GG|1|C|A|424
11GG|1|C|A|425
11GG|1|C|A|426
11GG|1|C|G|427

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS4