IL_11GG_021

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

11GG|1|C|A|526, 11GG|1|C|U|528, 11GG|1|C|A|529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_021 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.2759

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

11GG|1|C|G|509
11GG|1|C|U|510
11GG|1|C|G|511
11GG|1|C|C|512
11GG|1|C|C|513
11GG|1|C|A|514
11GG|1|C|G|515
*
11GG|1|C|C|522
11GG|1|C|G|523
11GG|1|C|G|524
11GG|1|C|U|525
11GG|1|C|A|526
11GG|1|C|A|527
11GG|1|C|U|528
11GG|1|C|A|529
11GG|1|C|C|530

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS4

Chain t

30S ribosomal protein S12