IL_11GG_033

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_033 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1157

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

11GG|1|C|C|773
11GG|1|C|A|774
11GG|1|C|A|775
11GG|1|C|A|776
11GG|1|C|C|777
*
11GG|1|C|G|793
11GG|1|C|G|794
11GG|1|C|U|795
11GG|1|C|A|796
11GG|1|C|G|797

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain 3

Small ribosomal subunit protein bS21

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain r

30S ribosomal protein S11