IL_11GG_034

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_034 not in the Motif Atlas

Homologous match to IL_6CZR_364

Geometric discrepancy: 0.1327

The information below is about IL_6CZR_364

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

11GG|1|C|G|881
11GG|1|C|G|882
11GG|1|C|A|883
11GG|1|C|G|884
11GG|1|C|U|885
11GG|1|C|A|886
11GG|1|C|C|887
11GG|1|C|G|888
*
11GG|1|C|U|899
11GG|1|C|A|900
11GG|1|C|A|901
11GG|1|C|A|902
11GG|1|C|A|903
11GG|1|C|C|904

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain t

30S ribosomal protein S12