IL_11GG_054

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_054 not in the Motif Atlas

Homologous match to IL_6CZR_368

Geometric discrepancy: 0.1361

The information below is about IL_6CZR_368

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

11GG|1|C|G|1395
11GG|1|C|C|1396
11GG|1|C|C|1397
11GG|1|C|C|1398
*
11GG|1|C|G|1491
11GG|1|C|U|1492
11GG|1|C|A|1493
11GG|1|C|A|1494
11GG|1|C|C|1495

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA