IL_11GG_073

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

11GG|1|I|A|504, 11GG|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_073 not in the Motif Atlas

Geometric match to IL_8B0X_075

Geometric discrepancy: 0.0576

The information below is about IL_8B0X_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

11GG|1|I|G|481
11GG|1|I|A|482
11GG|1|I|A|483
11GG|1|I|C|484
*
11GG|1|I|G|496
11GG|1|I|A|497
11GG|1|I|G|498
11GG|1|I|U|499
11GG|1|I|G|500
11GG|1|I|A|501
11GG|1|I|A|502
11GG|1|I|A|503
11GG|1|I|A|504
11GG|1|I|A|505
11GG|1|I|G|506
11GG|1|I|A|507
11GG|1|I|A|508
11GG|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL22

Chain c

50S ribosomal protein L24