IL_11GG_097

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

11GG|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_097 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.5184

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

11GG|1|I|U|1018
11GG|1|I|U|1019
11GG|1|I|A|1020
11GG|1|I|A|1021
11GG|1|I|G|1022
11GG|1|I|U|1023
11GG|1|I|G|1024
*
11GG|1|I|C|1140
11GG|1|I|U|1141
11GG|1|I|A|1142
11GG|1|I|A|1143
11GG|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain R

Large ribosomal subunit protein uL13

Chain m

50S ribosomal protein L36