IL_11GG_107

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

11GG|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1853

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

11GG|1|I|C|1208
11GG|1|I|U|1209
11GG|1|I|G|1210
11GG|1|I|C|1211
11GG|1|I|G|1212
11GG|1|I|A|1213
11GG|1|I|A|1214
11GG|1|I|G|1215
*
11GG|1|I|U|1234
11GG|1|I|G|1235
11GG|1|I|G|1236
11GG|1|I|A|1237
11GG|1|I|G|1238

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L20