IL_11GG_108

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_108 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.133

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

11GG|1|I|A|1262
11GG|1|I|U|1263
11GG|1|I|A|1264
11GG|1|I|A|1265
11GG|1|I|G|1266
11GG|1|I|U|1267
11GG|1|I|A|1268
11GG|1|I|A|1269
*
11GG|1|I|U|2011
11GG|1|I|G|2012
11GG|1|I|A|2013
11GG|1|I|A|2014
11GG|1|I|A|2015
11GG|1|I|U|2016
11GG|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL22

Chain M

Large ribosomal subunit protein uL4

Chain i

50S ribosomal protein L32