IL_11GG_133

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

11GG|1|I|A|1801, 11GG|1|I|C|1816, 11GG|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_133 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0884

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

11GG|1|I|U|1798
11GG|1|I|G|1799
11GG|1|I|C|1800
11GG|1|I|A|1801
11GG|1|I|A|1802
11GG|1|I|A|1803
11GG|1|I|C|1804
*
11GG|1|I|G|1813
11GG|1|I|G|1814
11GG|1|I|A|1815
11GG|1|I|C|1816
11GG|1|I|G|1817
11GG|1|I|U|1818
11GG|1|I|A|1819
11GG|1|I|U|1820
11GG|1|I|A|1821

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2