IL_11GG_160

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_160 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1749

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

11GG|1|I|C|2466
11GG|1|I|C|2467
11GG|1|I|A|2468
11GG|1|I|A|2469
11GG|1|I|G|2470
*
11GG|1|I|C|2480
11GG|1|I|G|2481
11GG|1|I|A|2482
11GG|1|I|C|2483
11GG|1|I|G|2484

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL16

Chain m

50S ribosomal protein L36