IL_11GG_171

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

11GG|1|I|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_171 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.4779

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

11GG|1|I|G|2737
11GG|1|I|A|2738
11GG|1|I|U|2739
11GG|1|I|A|2740
11GG|1|I|A|2741
11GG|1|I|G|2742
*
11GG|1|I|C|2762
11GG|1|I|G|2763
11GG|1|I|A|2764
11GG|1|I|A|2765
11GG|1|I|A|2766
11GG|1|I|C|2767

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL6

Chain R

Large ribosomal subunit protein uL13

Chain m

50S ribosomal protein L36