IL_11GG_179

3D structure

PDB id

11GG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chimeric Escherichia coli 70S ribosome containing an evolved 16S rRNA from Pseudomonas aeruginosa (PA-ST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11GG_179 not in the Motif Atlas

Homologous match to IL_7A0S_103

Geometric discrepancy: 0.3869

The information below is about IL_7A0S_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.5

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

11GG|1|J|G|23
11GG|1|J|G|24
11GG|1|J|U|25
11GG|1|J|C|26
11GG|1|J|C|27
11GG|1|J|C|28
*
11GG|1|J|G|56
11GG|1|J|A|57
11GG|1|J|A|58
11GG|1|J|A|59
11GG|1|J|C|60

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL5

Chain W

Large ribosomal subunit protein uL18