IL_11HG_133

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_133 not in the Motif Atlas

Homologous match to IL_8GLP_051

Geometric discrepancy: 0.0821

The information below is about IL_8GLP_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.3

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

11HG|1|28|G|1425
11HG|1|28|G|1426
11HG|1|28|A|1427
11HG|1|28|U|1428
11HG|1|28|C|1429
*
11HG|1|28|G|1455
11HG|1|28|C|1456
11HG|1|28|G|1457
11HG|1|28|C|1458
11HG|1|28|A|1459
11HG|1|28|C|1460

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 29

Large ribosomal subunit protein eL29

Chain Q

Large ribosomal subunit protein eL18