IL_11HG_189

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

11HG|1|28|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_189 not in the Motif Atlas

Homologous match to IL_8GLP_108

Geometric discrepancy: 0.0721

The information below is about IL_8GLP_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

12

Unit IDs

11HG|1|28|C|2867
11HG|1|28|G|2868
11HG|1|28|U|2869
11HG|1|28|A|2870
11HG|1|28|A|2871
11HG|1|28|C|2872
*
11HG|1|28|G|2877
11HG|1|28|G|2878
11HG|1|28|A|2879
11HG|1|28|U|2880
11HG|1|28|A|2881
11HG|1|28|A|2882
11HG|1|28|G|2883

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41

Chain ff

60S ribosomal protein L37a