IL_11HG_211

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

11HG|1|28|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_211 not in the Motif Atlas

Homologous match to IL_8GLP_141

Geometric discrepancy: 0.1922

The information below is about IL_8GLP_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57267.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

11HG|1|28|G|4347
11HG|1|28|A|4348
11HG|1|28|C|4349
11HG|1|28|C|4350
*
11HG|1|28|G|4364
11HG|1|28|C|4365

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 13

60S ribosomal protein L13

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a