IL_8GLP_141

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8GLP|1|L5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_141 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2284

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

8GLP|1|L5|G|4347
8GLP|1|L5|A|4348
8GLP|1|L5|C|4349
8GLP|1|L5|C|4350
*
8GLP|1|L5|G|4364
8GLP|1|L5|C|4365

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a