IL_11HV_015

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

11HV|1|28|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_015 not in the Motif Atlas

Homologous match to IL_8GLP_018

Geometric discrepancy: 0.0461

The information below is about IL_8GLP_018

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11HV|1|28|G|348
11HV|1|28|A|349
11HV|1|28|C|350
*
11HV|1|58|G|25
11HV|1|58|C|26

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4