IL_11HV_073

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

11HV|1|28|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_073 not in the Motif Atlas

Homologous match to IL_8GLP_081

Geometric discrepancy: 0.076

The information below is about IL_8GLP_081

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

11HV|1|28|G|1946
11HV|1|28|U|1947
11HV|1|28|G|1948
*
11HV|1|28|C|2035
11HV|1|28|C|2036

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 20

Large ribosomal subunit protein eL20

Chain 40

Large ribosomal subunit protein eL40

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L9

60S ribosomal protein L9