IL_11HV_079

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

11HV|1|28|A|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_079 not in the Motif Atlas

Homologous match to IL_8GLP_085

Geometric discrepancy: 0.059

The information below is about IL_8GLP_085

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11HV|1|28|G|2299
11HV|1|28|A|2300
11HV|1|28|G|2301
*
11HV|1|28|C|2334
11HV|1|28|C|2335

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4

Chain gg

60S ribosomal protein L28