IL_11HV_085

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_085 not in the Motif Atlas

Homologous match to IL_8GLP_092

Geometric discrepancy: 0.4995

The information below is about IL_8GLP_092

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_41261.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

44

Unit IDs

11HV|1|28|A|2477
11HV|1|28|C|2478
11HV|1|28|G|2479
*
11HV|1|28|C|2499
11HV|1|28|U|2500

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain cc

Large ribosomal subunit protein uL23