IL_11HV_087

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

11HV|1|28|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_087 not in the Motif Atlas

Homologous match to IL_8GLP_095

Geometric discrepancy: 0.09

The information below is about IL_8GLP_095

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

11HV|1|28|G|2549
11HV|1|28|G|2550
*
11HV|1|28|C|2768
11HV|1|28|U|2769
11HV|1|28|C|2770

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34