IL_11HV_095

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_095 not in the Motif Atlas

Homologous match to IL_9H3G_083

Geometric discrepancy: 0.0929

The information below is about IL_9H3G_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.3

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

8

Unit IDs

11HV|1|28|A|2832
11HV|1|28|A|2833
11HV|1|28|C|2834
11HV|1|28|A|2835
11HV|1|28|A|2836
11HV|1|28|U|2837
11HV|1|28|G|2838
*
11HV|1|28|C|3850
11HV|1|28|U|3851
11HV|1|28|A|3852
11HV|1|28|U|3853

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3