IL_11HV_097

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_097 not in the Motif Atlas

Geometric match to IL_8OI5_078

Geometric discrepancy: 0.0604

The information below is about IL_8OI5_078

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

11HV|1|28|G|2847
11HV|1|28|G|2848
11HV|1|28|A|2849
11HV|1|28|A|2850
*
11HV|1|28|U|3840
11HV|1|28|C|3841

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 25

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3