IL_11HV_112

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

11HV|1|28|A|3901, 11HV|1|28|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HV_112 not in the Motif Atlas

Homologous match to IL_8GLP_129

Geometric discrepancy: 0.0706

The information below is about IL_8GLP_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

9

Unit IDs

11HV|1|28|G|3900
11HV|1|28|A|3901
11HV|1|28|A|3902
*
11HV|1|28|U|4558
11HV|1|28|A|4559
11HV|1|28|C|4560
11HV|1|28|C|4561

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain L3

60S ribosomal protein L3